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Error to get geneInter and comp

Status: Open.

#40 In StatBiomed/SpatialDM;

· fisher-ww opened on Jan 23, 2026

KeyError: "Values ['HLA-DQB1'], from ['HLA-DQB1'], are not valid obs/ var names or indices."

Status: Open.

#39 In StatBiomed/SpatialDM;

· ChenPeizhan opened on Dec 17, 2025

AttributeError: 'csr_matrix' object has no attribute 'A'

Status: Open.

#36 In StatBiomed/SpatialDM;

· moor2562 opened on May 1, 2025

Extracting top K most likely sender and receiver cell type

Status: Open.

#35 In StatBiomed/SpatialDM;

· HarryZhang1224 opened on Feb 12, 2025

planning for upgrading in the next 10 days

Status: Open.

#33 In StatBiomed/SpatialDM;

· huangyh09 opened on Oct 30, 2024

Memory limit during sdm.spatialdm_local

Status: Open.

#32 In StatBiomed/SpatialDM;

· Jiayi-Zheng opened on Sep 7, 2024

Question about global permutation test

Status: Open.

#31 In StatBiomed/SpatialDM;

· sealx017 opened on Aug 22, 2024

InvalidIndexError when running sdm.extract_lr(adata, 'human', min_cell=3)

Status: Open.

#30 In StatBiomed/SpatialDM;

· Smilenone opened on Apr 7, 2024

The process of 'Spatial Clustering of Local Spots' using SpatialDE is taking an excessive amount of time. Could I have overlooked some parameters?

Status: Open.

#29 In StatBiomed/SpatialDM;

· ABU-TO opened on Jan 8, 2024

I keep getting error when running spatialdm_local AttributeError: 'NoneType' object has no attribute 'to_adata'

Status: Open.

#28 In StatBiomed/SpatialDM;

· smk5g5 opened on Jan 3, 2024

Bugs discovery for single-cell level spatialDM

Status: Open.

#25 In StatBiomed/SpatialDM;

· HelloWorldLTY opened on Nov 7, 2023

reading in h5ad file

Status: Open.

#23 In StatBiomed/SpatialDM;

· anamaria-uofg opened on Jul 13, 2023