Add eFP/ePlant gene ID validation, microarray probeset support, and m…#324
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rmobmina wants to merge 1 commit into
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Add eFP/ePlant gene ID validation, microarray probeset support, and m…#324rmobmina wants to merge 1 commit into
rmobmina wants to merge 1 commit into
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…aster DB list Adds per-eFP-project regex validation (EFP_PROJECT_REGEXES, is_efp_gene_valid) covering both canonical gene IDs and microarray probeset IDs, with a database-to-project mapping (DATABASE_EFP_PROJECT) so gene_expression.py can validate against the right format per database. Adds the eFP+ePlant discovery/validation pipeline: - scrape_view_databases.py / scrape_species_view_info.py: live-discover every eFP and ePlant view across 55 sites, tagging eFP-only vs ePlant-only vs both - build_proj_id_view_mapping.py: resolves multi-paper databases (e.g. atgenexp_*) to per-view proj_id breakdowns - validate_db_regex_coverage.py: tests every database's real sample IDs against production validation, including legacy databases no longer linked from a live dropdown - build_master_db_list.py: rolls everything up by species, tagging source (efp/eplant/both/legacy) and platform (microarray/rna_seq) 193 databases validated, 0 unexplained failures.
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